PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010719-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 665aa    MW: 73281.5 Da    PI: 7.0724
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010719-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.6e-13327383155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++t+e+Aa+a++ a++k++g
  AHYPO_010719-RA 327 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDTEEKAARAYDMAALKYWG 383
                      78*******************87776664446655.77******************98 PP

2AP247.25.6e-15426477155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  AHYPO_010719-RA 426 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 477
                      57****************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-9327383IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-15327393IPR016177DNA-binding domain
CDDcd000187.61E-20327391No hitNo description
SMARTSM003805.0E-23328397IPR001471AP2/ERF domain
PROSITE profilePS5103218.189328391IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-13328392IPR001471AP2/ERF domain
PRINTSPR003674.4E-6329340IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17426485IPR016177DNA-binding domain
PfamPF008478.5E-10426477IPR001471AP2/ERF domain
CDDcd000182.04E-25426487No hitNo description
PROSITE profilePS5103219.032427485IPR001471AP2/ERF domain
SMARTSM003801.5E-33427491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18427485IPR001471AP2/ERF domain
PRINTSPR003674.4E-6467487IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MKSLSNDDVN NNNNNNNNNN NGWLLGFSLS PQQHVSSSTT NTSSVPTSLS GTLNSFSHNH  60
FHQNNTTNNN NFYANYNNGW LSGLSVDNEV QTENNNALLY SHPFSLMPLK SDGSLCLPQG  120
MVQAIGNCST GTSSTTTSAT PKLEDFFGGH HHHHQTMGGN GTHHYDHQQQ QYPFYPSLYG  180
TSEGTLQAKE HQVVEDQLQS TIGETEISAG LRNWVHRSYI GCIGLETGGE QINGGDHDHQ  240
SGVAVSTTGG PIGYADLQSL SLSMSPGSQS SCVTASHQIT PSSTAAIGIE SLVMQESSRK  300
RGGERIDQNN KQIVHRKSLD TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR  360
QGGYDTEEKA ARAYDMAALK YWGPSSHINF PLENYQQQLE EMKNMTRQEF VAHLRRKSSG  420
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGANA  480
VTNFDIVRYD VDRIMASSTL LASELARRTK DLPAPPPPPP PVNNTEEERE KPDWKIVLHH  540
SSQQPQQSMH NQQQYMDQAS MGMGLAQHHE AILGLAGNHN DMGGAHFSNT SSLVTSLSSS  600
REDSPEKNTN SSLPLAFTMP PSATKIFTNP AANISPWINQ PVEIRNPSIS LPQMPVFAAW  660
ADLH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679674.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-140ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0J8CCE40.0A0A0J8CCE4_BETVU; Uncharacterized protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-123AP2 family protein